diff --git a/src/VencordNative.ts b/src/VencordNative.ts
index a5ca42366..81258d7b7 100644
--- a/src/VencordNative.ts
+++ b/src/VencordNative.ts
@@ -7,6 +7,7 @@
 import type { Settings } from "@api/Settings";
 import type { CspRequestResult } from "@main/csp/manager";
 import type { PluginIpcMappings } from "@main/ipcPlugins";
+import { NativeSettings } from "@main/settings";
 import { UserThemeHeader } from "@main/themes";
 import { IpcEvents } from "@shared/IpcEvents";
 import type { IpcRes } from "@utils/types";
@@ -57,6 +58,9 @@ export default {
         set: (settings: Settings, pathToNotify?: string) => invoke<void>(IpcEvents.SET_SETTINGS, settings, pathToNotify),
         getSettingsDir: () => invoke<string>(IpcEvents.GET_SETTINGS_DIR),
 
+        getNative: () => sendSync<NativeSettings>(IpcEvents.GET_NATIVE_SETTINGS),
+        setNative: (settings: NativeSettings) => invoke<void>(IpcEvents.SET_NATIVE_SETTINGS, settings),
+
         openFolder: () => invoke<void>(IpcEvents.OPEN_SETTINGS_FOLDER),
     },
 
diff --git a/src/components/settings/tabs/vencord/index.tsx b/src/components/settings/tabs/vencord/index.tsx
index 756945d24..ac5fed911 100644
--- a/src/components/settings/tabs/vencord/index.tsx
+++ b/src/components/settings/tabs/vencord/index.tsx
@@ -26,7 +26,7 @@ import { classNameFactory } from "@utils/css";
 import { Margins } from "@utils/margins";
 import { isAnyPluginDev } from "@utils/misc";
 import { relaunch } from "@utils/native";
-import { Alerts, GuildMemberStore, React, useMemo, UserStore } from "@webpack/common";
+import { Alerts, GuildMemberStore, React, useMemo, UserStore, useState } from "@webpack/common";
 
 import { DonateButtonComponent } from "./DonateButton";
 import { MacOSVibrancySettings } from "./MacVibrancySettings";
@@ -48,8 +48,20 @@ type KeysOfType<Object, Type> = {
     [K in keyof Object]: Object[K] extends Type ? K : never;
 }[keyof Object];
 
+function useSeparateSettings() {
+    const [value, setValue] = useState(() => VencordNative.settings.getNative().separateSettings ?? false);
+
+    return [value, (v: boolean) => {
+        const native = VencordNative.settings.getNative();
+        native.separateSettings = v;
+        VencordNative.settings.setNative(native);
+        setValue(v);
+    }] as const;
+}
+
 function Switches() {
     const settings = useSettings(["useQuickCss", "enableReactDevtools", "mainWindowFrameless", "frameless", "winNativeTitleBar", "transparent", "winCtrlQ", "disableMinSize"]);
+    const [separateSettings, setSeparateSettings] = useSeparateSettings();
 
     const Switches = [
         {
@@ -112,34 +124,58 @@ function Switches() {
         warning?: string;
     }>;
 
-    return Switches.map(setting => {
-        if (!setting) {
-            return null;
-        }
-
-        const { key, title, description, restartRequired, warning } = setting;
-
-        return (
-            <FormSwitch
-                key={key}
-                title={title}
-                description={
-                    warning ? (
-                        <>
-                            {description}
-                            <Notice.Warning className={Margins.top8} style={{ width: "100%" }}>
-                                {warning}
-                            </Notice.Warning>
-                        </>
-                    ) : (
-                        description
-                    )
+    return (
+        <>
+            {Switches.map(setting => {
+                if (!setting) {
+                    return null;
                 }
-                value={settings[key]}
-                onChange={v => {
-                    settings[key] = v;
 
-                    if (restartRequired) {
+                const { key, title, description, restartRequired, warning } = setting;
+
+                return (
+                    <FormSwitch
+                        key={key}
+                        title={title}
+                        description={
+                            warning ? (
+                                <>
+                                    {description}
+                                    <Notice.Warning className={Margins.top8} style={{ width: "100%" }}>
+                                        {warning}
+                                    </Notice.Warning>
+                                </>
+                            ) : (
+                                description
+                            )
+                        }
+                        value={settings[key]}
+                        onChange={v => {
+                            settings[key] = v;
+
+                            if (restartRequired) {
+                                Alerts.show({
+                                    title: "Restart Required",
+                                    body: "A restart is required to apply this change",
+                                    confirmText: "Restart now",
+                                    cancelText: "Later!",
+                                    onConfirm: relaunch
+                                });
+                            }
+                        }}
+                        hideBorder
+                    />
+                );
+            })}
+            {!IS_WEB && (
+                <FormSwitch
+                    key="separateSettings"
+                    title="Separate Settings Files"
+                    description="Keep separate settings for each Discord branch (Stable, PTB, Canary, Development)."
+                    value={separateSettings}
+                    onChange={v => {
+                        setSeparateSettings(v);
+
                         Alerts.show({
                             title: "Restart Required",
                             body: "A restart is required to apply this change",
@@ -147,12 +183,12 @@ function Switches() {
                             cancelText: "Later!",
                             onConfirm: relaunch
                         });
-                    }
-                }}
-                hideBorder
-            />
-        );
-    });
+                    }}
+                    hideBorder
+                />
+            )}
+        </>
+    );
 }
 
 function EquicordSettings() {
diff --git a/src/main/settings.ts b/src/main/settings.ts
index ed2f48500..fdaba10bb 100644
--- a/src/main/settings.ts
+++ b/src/main/settings.ts
@@ -50,11 +50,13 @@ export interface NativeSettings {
         };
     };
     customCspRules: Record<string, string[]>;
+    separateSettings?: boolean;
 }
 
 const DefaultNativeSettings: NativeSettings = {
     plugins: {},
-    customCspRules: {}
+    customCspRules: {},
+    separateSettings: false
 };
 
 const nativeSettings = readSettings<NativeSettings>("native", NATIVE_SETTINGS_FILE);
@@ -69,3 +71,9 @@ NativeSettings.addGlobalChangeListener(() => {
         console.error("Failed to write native settings", e);
     }
 });
+
+ipcMain.on(IpcEvents.GET_NATIVE_SETTINGS, e => e.returnValue = NativeSettings.plain);
+
+ipcMain.handle(IpcEvents.SET_NATIVE_SETTINGS, (_, data: NativeSettings) => {
+    NativeSettings.setData(data);
+});
diff --git a/src/main/utils/constants.ts b/src/main/utils/constants.ts
index 6b28f8339..4238aa7e6 100644
--- a/src/main/utils/constants.ts
+++ b/src/main/utils/constants.ts
@@ -29,11 +29,33 @@ export const DATA_DIR = process.env.EQUICORD_USER_DATA_DIR ?? (
 );
 
 export const SETTINGS_DIR = join(DATA_DIR, "settings");
-export const THEMES_DIR = join(DATA_DIR, "themes");
-export const QUICK_CSS_PATH = join(SETTINGS_DIR, "quickCss.css");
-export const SETTINGS_FILE = join(SETTINGS_DIR, "settings.json");
 export const NATIVE_SETTINGS_FILE = join(SETTINGS_DIR, "native-settings.json");
 export const DEV_MIGRATED = join(SETTINGS_DIR, "migration");
+
+function getBranchName(): string {
+    const name = app.getName().toLowerCase();
+    if (name.includes("canary")) return "canary";
+    if (name.includes("ptb")) return "ptb";
+    if (name.includes("development")) return "dev";
+    return "stable";
+}
+
+function isSeparateSettingsEnabled(): boolean {
+    try {
+        if (!existsSync(NATIVE_SETTINGS_FILE)) return false;
+        const parsed = JSON.parse(readFileSync(NATIVE_SETTINGS_FILE, "utf-8"));
+        return !!parsed?.separateSettings;
+    } catch {
+        return false;
+    }
+}
+
+const BRANCH_DIR = isSeparateSettingsEnabled() ? join(DATA_DIR, getBranchName()) : DATA_DIR;
+
+export const THEMES_DIR = join(BRANCH_DIR, "themes");
+export const QUICK_CSS_PATH = join(BRANCH_DIR, "settings", "quickCss.css");
+export const SETTINGS_FILE = join(BRANCH_DIR, "settings", "settings.json");
+
 export const ALLOWED_PROTOCOLS = [
     "https:",
     "http:",
diff --git a/src/shared/IpcEvents.ts b/src/shared/IpcEvents.ts
index e1927d735..8d9ce5ee7 100644
--- a/src/shared/IpcEvents.ts
+++ b/src/shared/IpcEvents.ts
@@ -56,4 +56,7 @@ export const enum IpcEvents {
     TRAY_CHECK_UPDATES = "VencordTrayCheckUpdates",
     TRAY_ABOUT = "VencordTrayAbout",
     SUPPORTS_WINDOWS_MATERIAL = "VencordSupportsWindowsMaterial",
+
+    GET_NATIVE_SETTINGS = "VencordGetNativeSettings",
+    SET_NATIVE_SETTINGS = "VencordSetNativeSettings",
 }